PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22446
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Dof
Protein Properties Length: 354aa    MW: 38260.7 Da    PI: 8.3201
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22446genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.2e-40120179261
    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
               ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ 
  EMT22446 120 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSL 179
               7899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-32116177IPR003851Zinc finger, Dof-type
PfamPF027012.0E-32122178IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.761124178IPR003851Zinc finger, Dof-type
PROSITE patternPS013610126162IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGQLRPAAGG GGDCLIKLFG KTIPVPDAGA GANAGDVDKD LGNFGRFTEP MGKKDLQHRG  60
GSTTAELKVQ EIAPQDSTGS PQQPEVVDVE DPSAAKNSVA DQQDEEQGDT ANQKEKLKKP  120
DKILPCPRCS SMDTKFCYYN NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSLS  180
AASHFLQRIR AALPGDPLCT PVNTNGTVLS FGSDASTLDV SEQMKHIKEL ASVTRTENTD  240
APSVGSSAEG CFQSRKHPRD GDEERDTKGN GKVWVPKTIR IDDVDEVARS SIWSLIGIKG  300
DKVEKDDGKG CKLARVFDPK DEAKTSSHRG NNSLPFLKGN PAALSRSVNF QERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529240.0AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558722.11e-117PREDICTED: cyclic dof factor 1-like
TrEMBLM8CGW70.0M8CGW7_AEGTA; Dof zinc finger protein
STRINGBGIOSGA011947-PA1e-174(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.14e-60cycling DOF factor 1